rs36581960 SNP Detail

Summary

• ID
  rs36581960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:61295755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAATAGCT TATTCAAGGG
  CGTGGCTCCA ATGACCTAAC TTCCTCCCAA TAGATCCTAC TTCTTAAGGG TGATACCACT
  TCTCAAGGAG GGCAGGCTGG GGACTGACCG AGCATTTAAC TCCTTGGCCT TTGGGGAATA
  GGTTAAGATG AGAACCACAA CAGGGTACCT AGGCCACAGG GGTTTTACAC ACTGGAGATC
  R
  GAACCATGCT GACAGCAGGT AGTAAACTAA CCAGCTAGTG AAAGCATCAG GAATGTGCTA
  GGATGTAGTA GCTAAGTGAG TGTAAACCTA ACATTCTGAG GCCTTGGATT TGATTCACAC
  ATTGCACACC TAAAAACACT GGTAAAAAAA CAAACCACAA AACTTTATCT CAAGTTCTTA
  GCAGGTGAGA AAAACATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51520172	NES14630121	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36581960					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51520172	NES14630121	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:61295755 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6575	CpG island 6575	1541 bp distal
Gm41168	predicted gene, 41168	715 bp upstream
Rr289684	regulatory region 289684	1646 bp proximal
Rr369842	regulatory region 369842	1494 bp downstream