rs36582316 SNP Detail

Summary

• ID
  rs36582316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:39631589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGCCAC TGAGTCATCT
  TCCCAGCCCT AAAATTATTT TGATTAAAAT ACTTTAATAG GTTATAGAAT GACTTACTAA
  TTAACATTTT TGATACAGAT AATAAAATCT ATGAGTTCTG GCCTAAAGAG CCTGGCCAGA
  GGCTAGATTA TAAACTCCTA AAAAGATTGT AGCTGCCTCA GAAAAGATTC TCAGGAGCAG
  R
  GAAGTGATTA CTGCTTTCGG GAGGATACAG TAAGGCTCAG CCTAAGTGTC AACTGGCCAT
  GGAAAGTCCA ACATGGACCA AGTTCTCTTC ACATACTGCT CAGCGTTTTA CCCCATAGTA
  TAAAAGCTAA CCAGCAATAT TTGGTTGTTA TTAGACAAGA AAGACATTGT TGAGATAACA
  AGGGAAATCA TAAAAGAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51616038	NES14841047	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36582316					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51616038	NES14841047	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:39631589 () rs orientation: forward

Symbol	Name	Function Class
Braf	Braf transforming gene	within coordinates
Fth-ps2	ferritin heavy chain, pseudogene 2	867 bp upstream
Tssr1816	transcription start site region 1816	851 bp downstream
Tssr60501	transcription start site region 60501	538 bp upstream