rs3658395 SNP Detail

Summary

• ID
  rs3658395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85436674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT CCAATGTTTA AAATATTGCC
  R
  GAGCCAGCCA TGGTAGTACA TGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5034305	WI_WGS_8_84408476	WI	MOUSE	f	SNP				G	A
ss46158374	mCV24193668	ABI	CRAMUS_MOUSE	f	SNP	G		G		A	G
ss145392417	ENSMUSSNP3972498	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			G
ss322751417	CHEV_8_87233944	CHEVERUD	SCREENING_POP	f	SNP							G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3658395					SNP	G	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85436674 () rs orientation: forward

Symbol	Name	Function Class
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	74 bp distal
Rr178193	regulatory region 178193	1127 bp proximal
Rr187001	regulatory region 187001	1473 bp distal
Rr187002	regulatory region 187002	1073 bp distal
Rr187003	regulatory region 187003	1726 bp proximal
Tssr78440	transcription start site region 78440	1400 bp downstream
Tssr82127	transcription start site region 82127	1529 bp upstream