rs36587557 SNP Detail

Summary

• ID
  rs36587557
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73970772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACGGCCCC AAATACCTCT
  GCCTCATGGT GAGATTTCTG CCTTCACTGG GTACCTCACT CATCCTTAGA TTCTCAGTCC
  CTAACACGTG GCTGGGTGCA TGGTAGGTGC TGGACAACTC TGTACTAGGT CACCTGTTTT
  GATGCCTCTA AAACAGCATC ACCAAGAATC TCGAAGACAT CAGAGTTCCC AGAAACAATG
  W
  CTTCCTTTAT GCCTAATCCG TCCTCGTGGA ACCACGGGGA CAAACAGAAC CAGCACAGAA
  AGTCTTCCTA GATCCACCAT GGCAAGGTGT CTTTCCCTCC TTCCCTCTCA GAAAAGAATC
  CTGTTCAGAC ATTCAAGTGA CCCTTGTACC ATGTGTACCC ACCAGAAGGG GCAGCCCCCA
  CATGCCGAAA TGATACCGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276606	NES14517756	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36587557					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276606	NES14517756	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73970772 () rs orientation: forward

Symbol	Name	Function Class
Rr34544	regulatory region 34544	within coordinates
Rr371521	regulatory region 371521	692 bp upstream
Tns1	tensin 1	within coordinates
Tssr12218	transcription start site region 12218	882 bp upstream
Tssr12219	transcription start site region 12219	818 bp upstream
Tssr12220	transcription start site region 12220	785 bp upstream