rs36587643 SNP Detail

Summary

• ID
  rs36587643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78005625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCACCATG ATGACATTAA
  AGATAGGAAA TTGCCAACTG GAATGTCCCA ATCAGAGACT GCCTGTCATA CCTGTTGGTG
  TACTCAAATG GTTTAAGATG GGACTGGCAG GTACCACTAC CTGTTTGATG GCAGGATTGG
  TAGATGAACT TTTCAAATGC TATCATTCCT ACCGCTTAGA ACACCTTCTG TTTCCCAAGG
  R
  TCCATGAGAT TCTGGTGCTG TCATCCTTCC ACTTGGCCAT TCCCCATTTC TAAATATATT
  TGTCCCCTGT GCTACCTCAC CTGGTCTTCT GCAGTATACC CTCAGCTCTT CTTATTTGGG
  TCATGCTTGC TTCCCTCAGA TTATCCAAAG TGGTTTTGTG AAGACACAGT CCCAAACATC
  TCTTCATGCC ACCAAAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51286110	NES14517110	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36587643					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51286110	NES14517110	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78005625 () rs orientation: forward

Symbol	Name	Function Class
Gm70314	predicted gene, 70314	within coordinates