rs3658785 SNP Detail

Summary

• ID
  rs3658785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44464697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACACAGGCA CAGGGCAGCG ACGGCAATGG AGGCTGCACC
  AACAATTGGG AGGCAGCGTG GAAGATTGTT CAGCTGGGTG AAGACAGGCA CCAAGGCGAA
  R
  GTGGAGGACC TGTGAGGACA AGGGGACGTG GGTGGGATTG AGTCAAAGCG GCTTGACCCA
  CAGGCTACAC AGTTTCCTTC TTTCCGAAAA TTTCAGCGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5034696	WI_WGS_7_34381251	WI	MOUSE	f	SNP	A			G
ss149123014	ENSMUSSNP6750998	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A
ss322199700	CHEV_7_52070643	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3658785					SNP	A	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44464697 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	476 bp proximal
Il4i1b	interleukin 4 induced 1B	1097 bp upstream
Nup62	nucleoporin 62	815 bp upstream
Rr400297	regulatory region 400297	499 bp upstream
Tssr66425	transcription start site region 66425	1933 bp downstream
Tssr66426	transcription start site region 66426	656 bp upstream
Tssr66427	transcription start site region 66427	1017 bp upstream
Tssr66428	transcription start site region 66428	1050 bp upstream
Tssr66429	transcription start site region 66429	1091 bp upstream
Tssr66430	transcription start site region 66430	1113 bp upstream
Tssr72229	transcription start site region 72229	1929 bp upstream
Tssr72230	transcription start site region 72230	346 bp downstream
Tssr72231	transcription start site region 72231	391 bp downstream
Tssr72232	transcription start site region 72232	636 bp downstream
Tssr72233	transcription start site region 72233	1313 bp downstream
Tssr72234	transcription start site region 72234	1681 bp downstream