rs3658809 SNP Detail

Summary

• ID
  rs3658809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68999840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCG ACTCACTATT GGGTTAAGGT
  Y
  GGGATGCTGG GCTAGCAGGT TCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss5034720	WI_WGS_11_69690117	WI	MOUSE	f	SNP				T			C
ss37167855	NES08491047	PERLEGEN	MM_PANEL2	f	SNP	T	C	C		T	T			C	C		C	C		C
ss132349005	ENSMUSSNP2104271	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss323727503	CHEV_11_68922516	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs3658809					SNP	T	C	C	T	T	T	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37167855	NES08491047	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68999840 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	1845 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	1905 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	1451 bp upstream
Per1	period circadian clock 1	within coordinates
Rr402659	regulatory region 402659	1558 bp upstream
Rr449875	regulatory region 449875	1015 bp proximal
Rr449876	regulatory region 449876	1558 bp proximal