rs36588543 SNP Detail

Summary

• ID
  rs36588543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60196632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACTTCTC CATTGAGGAA
  TGGGAATAAC TATAACTTTA ACAGGGAAGC AAATGCTACC CAGGCACTTG CCTCGGGGAT
  GGGAAACACA CTGTGTCTCA GGCCCAGGAA GCTGGAGAAC AAAACAGTAG GAAGAGGGGA
  AGACTGTGGT GAACTCTCAG CCACCAGTCT CCATGAACAG TTCCAGCACC ATGGAGGCGT
  R
  GGCTCCTATT TCCTCCCGAT ATACACGAGA CCTAATGACT CAGGGCAGCT TATCCACTCC
  TGTGCCAAGG CAGGATGGGA ACTGATAGCA GACATGGCTG CGTTTCTTAA TGTATTTAGC
  ACTGGCCACC CATGCCATTG CTCAACAGGC CTCTTGGCCA GCCGCTGAGA ACTATTCTAT
  ACTGCTCATT AAATTTGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	KK/HlJ	NZW/LacJ
ss50866524	NES14170946	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	KK/HlJ	NZW/LacJ
rs36588543					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866524	NES14170946	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60196632 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Vsir	V-set immunoregulatory receptor	within coordinates