rs3658888 SNP Detail

Summary

• ID
  rs3658888
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100944137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCTG GGGACCCCGG GCCAGCTCCC
  D
  TGTCCCCACT TCCATCCAAG CAGCC                                      
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
ss5034799	WI_WGS_15_102002944	WI	MOUSE	f	SNP		A	T
ss39312304	mCV25401757	ABI	CRAMUS_MOUSE	f	SNP	G		T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	C57BL/6J	DBA/2J
rs3658888					SNP	G	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100944137 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7763	CpG island 7763	within coordinates
Rr509881	regulatory region 509881	571 bp proximal
Rr509882	regulatory region 509882	1131 bp proximal
Scn8a	sodium channel, voltage-gated, type VIII, alpha	318 bp downstream
Tmdd1	transmembrane and death domain 1	86 bp downstream
Tssr136507	transcription start site region 136507	1106 bp downstream
Tssr136508	transcription start site region 136508	1124 bp downstream
Tssr136509	transcription start site region 136509	1145 bp downstream
Tssr136510	transcription start site region 136510	1164 bp downstream