rs36589213 SNP Detail

Summary

• ID
  rs36589213
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27800275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCTTCCA GGCCAATTTC AAACAGGAAA CAAGTTTGAA
  GAGGAGCAAG TTTGAAGGCT GGACACCCAG ACACAGAGCT GGAGCCACAG AGAGTGTGAT
  R
  CTAGAGGGGT CTCAAACACA AAAGTCCCTG GGGACCAGTC TTCAGAGACT CCTGAGGCTG
  GACTAGCACC CAGGGGCTGA ATTTTGTAAT GTGGGCCATC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51887568	NES14907951	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36589213					SNP	A	A	G	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887568	NES14907951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27800275 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Gm10935	predicted gene 10935	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Rr155708	regulatory region 155708	within coordinates
Rr170288	regulatory region 170288	within coordinates
Tssr65362	transcription start site region 65362	404 bp upstream
Tssr65363	transcription start site region 65363	445 bp upstream