rs36589329 SNP Detail

Summary

• ID
  rs36589329
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86415880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GTAAATAGCG CCTCCACAGG ATCCCTTGTG TGAATGCATG CACTCGAATA
  S
  TTCTTTCTTA CTTGGGGCGG TGTTCACGTG CCCAAAACAG CGTCCCCACA           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51753262	NES14806719	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36589329					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51753262	NES14806719	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86415880 () rs orientation: forward

Symbol	Name	Function Class
C87436	expressed sequence C87436	within coordinates
Cpgi17664	CpG island 17664	within coordinates
Gm44790	predicted gene 44790	within coordinates
Gm66311	predicted gene, 66311	258 bp upstream
Rr368111	regulatory region 368111	83 bp downstream
Rr399735	regulatory region 399735	410 bp downstream
Tssr57468	transcription start site region 57468	493 bp downstream
Tssr57469	transcription start site region 57469	467 bp downstream
Tssr57470	transcription start site region 57470	185 bp downstream
Tssr57471	transcription start site region 57471	171 bp downstream
Tssr57472	transcription start site region 57472	140 bp downstream
Tssr61792	transcription start site region 61792	262 bp upstream