rs36590158 SNP Detail

Summary

• ID
  rs36590158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6168490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGACCAC TTTGTGCCCT
  ACTCCTGGCC AGTTTCTATA AAACCCTGGG AGACGGGAAG GGTCTGGACC ACCTTCAAAC
  TCATGCTCAG TGACAGAGCT ATTTTGGCTG GGACTGTGAG CCAGGACTCC AGGATCCCTG
  TTCCCAGCCG CACTGCCCAA CAACTACACA GCCTCCCTTC CGCAGAAGAG CCAGACGCTG
  Y
  GACGCCGGCT CCCTGCAGCC TGTGCTGCAG CCGCTGTCCA CCGGAGGGGG GCGAATCCAC
  GTCAACCTGT TGTTTGCCCA GCTCCTATTG ATCAAGTCAG AGCTACAAGG AAATGCGGCA
  CACACACGCG CTTGGAAAGT TTAGCTTACA GGAAGTTTTG GGAGAGCAGC GCCAGTAACT
  GGGCGGCCGG GACAACACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640653	NES14035623	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36590158					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640653	NES14035623	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6168490 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	within coordinates
Pdgfd	platelet-derived growth factor, D polypeptide	94 bp upstream
Tssr2757	transcription start site region 2757	188 bp upstream
Tssr83664	transcription start site region 83664	30 bp downstream
Tssr83665	transcription start site region 83665	2 bp downstream
Tssr83666	transcription start site region 83666	63 bp upstream
Tssr83667	transcription start site region 83667	80 bp upstream
Tssr83668	transcription start site region 83668	111 bp upstream
Tssr83669	transcription start site region 83669	148 bp upstream