rs36590237 SNP Detail

Summary

• ID
  rs36590237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:71226061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATGGTAA CCTTAGCAAC
  CTCATGCGAT TGGTTACTAT GTGGTAGTGT CTGACCTCCA AGCCTGAATT TCTGCTATAA
  GATTACTGAG TTTAAAAAAA TCACATGGTA AAATAGCGAC AACACCTCTG GTTATGATAC
  TAAGCAAACC CTAAAAATAT ACTGTCATCT TCAAAAGTTA AATACTGTAT TACCAACCAT
  Y
  GTTGCCATTT AGATCAGTTC AGAAACATCT CCTGGGTCTT CCTGTAAAGT CTGTACTGAG
  AGTCAGGAAG TCCAATCTAC AAATCCACTA GGGTTTATCA TTGTAGGCTA GCTCCAGATG
  CACTGCCATT GAAACTGATA AGCATAGAAA GGTGTTCTTG TTTCTGATGA TGAGTATCAT
  GAGCATGGAT GAGTATCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss50470078	NES13703546	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs36590237					SNP	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50470078	NES13703546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:71226061 () rs orientation: forward

Symbol	Name	Function Class
Rr393876	regulatory region 393876	720 bp upstream