rs36590794 SNP Detail

Summary

• ID
  rs36590794
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4920579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAAGAC AGAAGCATGT
  TTTTAAAATT ACACACAACA GAAAGCAGTT CTCCATGGTA CACAGGCATC CAGGGTACCA
  TGCAGCAATT GCTCAGAAAA TATTTGATGC TTCATTGATT GGACATTGCG TGGACCCAGG
  ATCCACAGGC AGACTGTGCC CCAGAGAAGC TTCCAGTCAT GGGAACCAAT GTTATTCTGG
  R
  TAATCAGGGA GCTTGGATAT ATGACAGAGT GAATCCCTTC CATAGAGGAA AGCCAGGAGA
  AGGAAGGCAG AGGAGAGTGT AATGGAAAGC TCATGGAGAA GAGGAATGAT GGCAGGAAAC
  ACTGTAGCAC ATGTCTATAA TTCCAGCACT TGGGTATAGT AGAGGCAGTA AAGTCAGGAG
  TTCAAGGCCA ACCTGAGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50581862	NES13654125	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36590794					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50581862	NES13654125	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4920579 () rs orientation: forward

Symbol	Name	Function Class
Actn3	actinin alpha 3	within coordinates
Tssr154367	transcription start site region 154367	1155 bp downstream
Tssr154368	transcription start site region 154368	1137 bp downstream
Tssr154369	transcription start site region 154369	525 bp upstream
Tssr157522	transcription start site region 157522	1102 bp upstream
Tssr157523	transcription start site region 157523	1798 bp downstream