rs36591237 SNP Detail

Summary

• ID
  rs36591237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6167642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCTAATG AATGAATATC
  ATGTATGTCC TATTCTCTAG ACTTTCAGGC CTTAAAGATG TTGGGACTTT TGTATCACAA
  ACGTCACTGA TGAACAGCTG AGGAAATATG TATGCTTGAT TGAGATTCAT CTACCAAAAA
  AAAATCATAG AACAAAATTA GTTCATCTAA TTCTTGCCAC AGTCACACAA ATCATTTCTA
  Y
  TTGTGTTTTG TACCAAAAGA CACTGCATTT CTGGGGTCCA GTGCTTTCTT GCTTTCTTTC
  CTCCCACTGT TTTTTTTTTT TTTTTTTTTT TTTTTTAACC TATGGCCAAA TATCCCTCCT
  TCATTTCTTC TATAGTATTA ACATATTTAA AATCTAGAAA ACATACAATA TTCACAGGAT
  TTTGCTTTGT TTTTTGTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	PWD/PhJ
ss50640663	NES14035672	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	PWD/PhJ
rs36591237					SNP	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640663	NES14035672	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6167642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	758 bp proximal
Pdgfd	platelet-derived growth factor, D polypeptide	942 bp upstream
Tssr2757	transcription start site region 2757	1036 bp upstream
Tssr83664	transcription start site region 83664	807 bp upstream
Tssr83665	transcription start site region 83665	828 bp upstream
Tssr83666	transcription start site region 83666	911 bp upstream
Tssr83667	transcription start site region 83667	928 bp upstream
Tssr83668	transcription start site region 83668	959 bp upstream
Tssr83669	transcription start site region 83669	996 bp upstream