rs36591666 SNP Detail

Summary

• ID
  rs36591666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:41018630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGAAGAGA TGCTGGTTAA AGATGTTTGT CTAGGGGTGA
  CAGATGGCAC CCCAGTGTGC TATGATCAGA GTCTAGGCAG GGAGGTGATT GAAGCTACCA
  Y
  CTGCACTCGT TCAGTAAGCA CCAATTATCA TTGTTTTGCT GACTATTGTG TACGTTCACT
  CTCTTGACCC AATGAAAAGA ATCAAAGCGA TTCAGAAAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50828496	NES13536819	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36591666					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50828496	NES13536819	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41018630 () rs orientation: forward

Symbol	Name	Function Class
Dntt	deoxynucleotidyltransferase, terminal	within coordinates
Rr365008	regulatory region 365008	30 bp distal
Rr365009	regulatory region 365009	171 bp proximal
Rr370496	regulatory region 370496	767 bp downstream
Rr370497	regulatory region 370497	940 bp upstream
Tssr5510	transcription start site region 5510	1020 bp downstream
Tssr156412	transcription start site region 156412	793 bp downstream
Tssr159242	transcription start site region 159242	931 bp downstream
Tssr159243	transcription start site region 159243	961 bp downstream
Tssr159244	transcription start site region 159244	982 bp downstream
Tssr159245	transcription start site region 159245	991 bp downstream
Tssr159246	transcription start site region 159246	1853 bp downstream
Tssr159247	transcription start site region 159247	1867 bp downstream