rs36591711 SNP Detail

Summary

• ID
  rs36591711
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:36268119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTACCA TATCATGCAC
  TAAGGCAATC ATCCTTTACT TGACAGGAAA ACTGGGAGAG AGTAGAGCTG GAAAGTGGAG
  GGAGCAGACC ATTGTCTATC TCACACGAGC ATCTGGGAAA GACCTAGAAG CTCCTTTTGA
  TTGGTAGATC ATCTTGCTTA GAAGAGGCAG CTTATCCTCA AGGGTATTAA AGATAGACTC
  R
  GAAGACGAGG CCTTGAGATC CACCCCTCTG CCCAGGATCC TTCTCCTTGC CTTTTGTCAA
  AGGCAGAGAC TAGCGCATTG CTGATGTCAA GAAGAGAGAA TGTTGGGGAT TGTCTCTAAG
  GCTCCACTAG GGAGGCCTTT GTGATGAAAC ACAAGTTGCT AAGTGCGTTT AGTGAAAGGT
  AGAACACTTA AGAGTGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50978577	NES14418325	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	A	A	G	G	G	G		G	G	A		G
ss324007790	CHEV_12_36944707	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36591711					SNP	G	A	G	A	A	A	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50978577	NES14418325	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:36268119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm60325	predicted gene, 60325			181 bp upstream
Lrrc72	leucine rich repeat containing 72			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr116139	transcription start site region 116139			52 bp downstream
Tssr116140	transcription start site region 116140			68 bp downstream