rs3659186 SNP Detail

Summary

• ID
  rs3659186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121324505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCTAGGG AACCCAGTCT
  CAGTCTGAGC CCATGACAGG TCACAAGGAC CCTGGGGATG GCCAGCACTG ACAGGCTTTG
  CCCCTCTGAG GTATGACAGA GCTCCTAAGA TAGGCTCCTC AATGAGGGCT ATGCCTACCG
  AAAACCCATG CAAATGTTAT CTCTTCATGT GCTTTGGGCG TCATCTTAGT GTGAGGCTGG
  Y
  CGATAAAGGA ACAGCTGTAG AACTGTCAGC TGGCAGGCCA TGAGAAAAAC ATTGAGCAGC
  ACAGTGCAGC CAGGTCTTCT TGACACATGC TGGGAAGAGT CTTATCCCGC TAGGGCCTGA
  GACTAGAATT CATAGGATGG AGCCCAAAAC CAGACTTGGT TTCATATGTT ATGAGCTATG
  TCTCAGCACT GGGACCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss5035097	WI_WGS_11_122374558	WI	MOUSE	f	SNP	C							T
ss37236103	NES08513781	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		T	T	T	T	T	T	T	T	C
ss132912428	ENSMUSSNP6365419	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs3659186					SNP	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236103	NES08513781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121324505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4346	CpG island 4346	1128 bp proximal
Fn3k	fructosamine 3 kinase	1274 bp upstream
Rr461974	regulatory region 461974	257 bp distal
Rr461975	regulatory region 461975	744 bp proximal
Tssr106404	transcription start site region 106404	1269 bp upstream