rs36592679 SNP Detail

Summary

• ID
  rs36592679
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135282338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG GGAGAGAGGA AAGGCATCCG
  H
  AGGGCAGAGG TACAAGGGAA AGAGC                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51380330	NES14468575	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	C	C	C		C	C	C	T		C
ss145531788	ENSMUSSNP3197011	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss319989367	CHEV_1_137251177	CHEVERUD	SCREENING_POP	f	SNP								C					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36592679					SNP	A	C	T	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380330	NES14468575	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135282338 () rs orientation: forward

Symbol	Name	Function Class
Gm56137	predicted gene, 56137	778 bp upstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates