rs3659347 SNP Detail

Summary

• ID
  rs3659347
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56702770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC TGGCAGGGTC ACAGGAATCC
  W
  GTATGGGGAC AACTCCAGGG GTACT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5035262	WI_WGS_9_57323178	WI	MOUSE	f	SNP	A		T
ss46338199	mCV25255185	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss136515317	ENSMUSSNP174476	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
ss322971055	CHEV_9_56643293	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3659347					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56702770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21799	CpG island 21799	within coordinates
Gm31586	predicted gene, 31586	1506 bp upstream
Lingo1	leucine rich repeat and Ig domain containing 1	within coordinates
Rr679503	regulatory region 679503	within coordinates
Rr679504	regulatory region 679504	642 bp proximal
Rr679505	regulatory region 679505	783 bp proximal
Rr679506	regulatory region 679506	1624 bp proximal
Tssr89733	transcription start site region 89733	280 bp downstream
Tssr89734	transcription start site region 89734	734 bp downstream
Tssr89735	transcription start site region 89735	784 bp downstream
Tssr89736	transcription start site region 89736	1386 bp downstream