rs36593820 SNP Detail

Summary

• ID
  rs36593820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86587526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGTCCC TGACCTCTGA
  CTCCTGAAAT CTGTAGCCAG ATCAAAATGG ACCTGAGCCA GTTTCTTCTC ACTTCGGTGC
  TCCAATCTGG CAAGAGCTCG GGATAACCAG ACACGAGCAC AAGTGGGGAA ATCAGTGGCC
  ATTGTGCCTC CTGGGTGGTG GGTACTCCAG AGACTATGAG AGCGATCATG CCATCATGTT
  Y
  TGGGGCCCTG GATCAGTTTG AAGACGAAGA AGAAACATTT ATTAGAAGCC ACCTAATGCT
  CCTGGTTGAA AGTCGCAAGG AGAGCCAGGA GATGGGGCAC TTGGAGCTAG AAGGACCAGG
  CCGCTGGGGG CCTGCTGTGT GACTTGTAGC TTTCATCCCC AGTCTGTGGT TGGTTTGTGA
  CCTGTGCTGA ACGTCCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51751732	NES14803741	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36593820					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51751732	NES14803741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86587526 () rs orientation: forward

Symbol	Name	Function Class
Gm67317	predicted gene, 67317	1187 bp upstream
Rr150658	regulatory region 150658	within coordinates
Tssr57494	transcription start site region 57494	971 bp downstream
Tssr61824	transcription start site region 61824	1218 bp upstream
Tssr61825	transcription start site region 61825	1182 bp upstream