rs3659414 SNP Detail

Summary

• ID
  rs3659414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34612444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGACACA CGTAAACAAA CTGCTCCACA ATGCTCCCCA
  AACCAGTAAC GTCTCTCCAG TCTTATGACA CTGGCAGCTA GGTGGCTTAT TTTATATCAA
  Y
  GGTGTCTTAA GTGACACACC AGTAAGGTAA GGATTCATAC AGTAATTGAC TGATGCAACA
  CTCGGAAAAT GAAACAGAGA GGAGTGTGGT TTCTACTTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5035329	WI_WGS_8_33067635	WI	MOUSE	f	SNP			T	C
ss46235968	mCV22853975	ABI	CRAMUS_MOUSE	f	SNP	T	T		C
ss149094927	ENSMUSSNP5240235	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T			T
ss322575452	CHEV_8_35208344	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3659414					SNP	T	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34612444 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	1001 bp proximal
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661962	regulatory region 661962	within coordinates
Rr661963	regulatory region 661963	547 bp proximal
Rr661964	regulatory region 661964	1733 bp proximal
Tssr76861	transcription start site region 76861	41 bp downstream
Tssr76862	transcription start site region 76862	1035 bp upstream
Tssr76863	transcription start site region 76863	1070 bp upstream
Tssr76864	transcription start site region 76864	1085 bp upstream
Tssr80896	transcription start site region 80896	857 bp downstream
Tssr80897	transcription start site region 80897	1291 bp downstream
Tssr80898	transcription start site region 80898	1427 bp downstream
Tssr80899	transcription start site region 80899	1442 bp downstream
Tssr80900	transcription start site region 80900	1463 bp downstream
Tssr80901	transcription start site region 80901	1484 bp downstream
Tssr80902	transcription start site region 80902	1684 bp downstream
Tssr80903	transcription start site region 80903	1728 bp downstream