rs3659440 SNP Detail

Summary

• ID
  rs3659440
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:68999960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAT CCTGGCCACT CTGATGACCC
  S
  CTCTTCTCAG AACTGGATGG ATTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5035355	WI_WGS_11_69690237	WI	MOUSE	f	SNP			G	C
ss132349017	ENSMUSSNP2099870	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C			G
ss323727506	CHEV_11_68922636	CHEVERUD	SCREENING_POP	f	SNP						C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3659440					SNP	G	C	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:68999960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3105	CpG island 3105	1725 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)	1785 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)	1331 bp upstream
Per1	period circadian clock 1	within coordinates
Rr402659	regulatory region 402659	1438 bp upstream
Rr449875	regulatory region 449875	895 bp proximal
Rr449876	regulatory region 449876	1438 bp proximal