rs36594420 SNP Detail

Summary

• ID
  rs36594420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:34524441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTGTTA CCCAGTCATG
  CTATTGTGCT CACGAAAATT TCTACCTAAC TGGACTTAGT TTGTAAAATG GATTAGAAAT
  ACGTGAGAAC CAATTAGCAG AGTGCTCTCA GTCTGGGAGG AGGGTTTATA CCGGGTTGCT
  AAGGGGCTTC CTCCTTGTCT AACAGTCGAA TGAAGACATT CTCAGCCTCC TAAACTTATT
  R
  GTAAACGCTG CAACAGGCTA TGAGTGCTCT GATCAACCCA GACCTCAACC CATTTGAAAC
  ATCTGCAGGG TCTGCGGGAA AGCTCCTGAC CCACAGCTAG CTCCAAAGGA GAAAGCATAC
  TTGATCTGCC TCGAAGGTTC TGACCTGATG GCGACCCGCC AAGTGACATG CCTGGGAAGA
  TTTCACAACT GCTGTCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss51237332	NES14284668	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs36594420					SNP	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237332	NES14284668	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:34524441 () rs orientation: forward

Symbol	Name	Function Class
4930568A12Rik	RIKEN cDNA 4930568A12 gene	within coordinates
Cpgi120	CpG island 120	212 bp proximal
Gm32566	predicted gene, 32566	within coordinates
Rr409037	regulatory region 409037	911 bp distal
Rr409038	regulatory region 409038	461 bp distal
Rr409039	regulatory region 409039	within coordinates
Rr409040	regulatory region 409040	563 bp proximal
Rr409041	regulatory region 409041	842 bp proximal
Tssr36	transcription start site region 36	31 bp downstream
Tssr11221	transcription start site region 11221	564 bp downstream
Tssr11222	transcription start site region 11222	588 bp downstream