rs3659447 SNP Detail

Summary

• ID
  rs3659447
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48768200 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAC ATGACCCAAC ACAAAATAGA
  M
  AACTTGCTTA AAACATTAGA AGATT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5035362	WI_WGS_17_47499986	WI	MOUSE	f	SNP			C	A
ss145717266	ENSMUSSNP3962927	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss325408736	CHEV_17_48600497	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3659447					SNP	A	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48768200 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr370279	regulatory region 370279			939 bp upstream
Rr528302	regulatory region 528302			651 bp distal
Rr528303	regulatory region 528303			503 bp proximal
Tssr145120	transcription start site region 145120			1183 bp upstream
Unc5cl	unc-5 family C-terminal like			Intron
				Noncoding-Transcript-Variant