rs36594926 SNP Detail

Summary

• ID
  rs36594926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6917280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCTGACTC CTCAGGAGAC CCCAGGGTCA GTTAGAACTC
  AGATGGCCAC ACCTAAACTC TGCTCATCTC TTTCTGCAGA TGAGGAAACT GAGGGGGTGA
  Y
  TGAGAGCTAC AGCATCATAG GAGCACCGGG TCAAACATCT GTTCCTGAGT GGGCCTCATT
  CCAGCTGTGT GACCTTGAAC ATGGTGCTTT GTCTAACTGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50594190	NES13645614	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36594926					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50594190	NES13645614	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6917280 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	1949 bp upstream
Cpgi10534	CpG island 10534	828 bp proximal
Gm59107	predicted gene, 59107	within coordinates
Gpr137	G protein-coupled receptor 137	within coordinates
Rr405833	regulatory region 405833	1450 bp upstream
Rr405834	regulatory region 405834	1788 bp upstream
Rr543509	regulatory region 543509	1327 bp distal
Rr543510	regulatory region 543510	917 bp proximal
Rr543511	regulatory region 543511	1952 bp proximal
Tssr154697	transcription start site region 154697	1963 bp upstream
Tssr154698	transcription start site region 154698	1989 bp upstream
Tssr157902	transcription start site region 157902	1516 bp downstream
Tssr157903	transcription start site region 157903	1909 bp downstream