rs3659532 SNP Detail

Summary

• ID
  rs3659532
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85436832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACACT ATTAGAAGCC AAAACTGGTG
  R
  CTTATTTTTG TAATCTCAGC ACTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5035448	WI_WGS_8_84408634	WI	MOUSE	f	SNP				A	G
ss46221499	mCV24193669	ABI	CRAMUS_MOUSE	f	SNP	A		A		G	A
ss145392422	ENSMUSSNP5021340	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			A
ss322751418	CHEV_8_87234102	CHEVERUD	SCREENING_POP	f	SNP							A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3659532					SNP	A	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85436832 () rs orientation: forward

Symbol	Name	Function Class
Nfix	nuclear factor I/X	within coordinates
Rr178192	regulatory region 178192	232 bp distal
Rr178193	regulatory region 178193	969 bp proximal
Rr187001	regulatory region 187001	1631 bp distal
Rr187002	regulatory region 187002	1231 bp distal
Rr187003	regulatory region 187003	1568 bp proximal
Tssr78440	transcription start site region 78440	1558 bp downstream
Tssr82127	transcription start site region 82127	1687 bp upstream