rs3659540 SNP Detail

Summary

• ID
  rs3659540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62372031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTAAG AGTTGCTGCG
  GACATGGTGA CTCTTCACAG CAATAGAACA ATGACCGAGA CAACCGTACT CCAGAGATTA
  CTATGCATTT TTAATAACCA TGGAAGTTGT TCGAGGTTTA AGGTAATATT AAGTTTTCAG
  AGACATACTT TCTTTTTTAC AGCTTTCTAT ATTTTTCATA GGTTTAATAA TTTACACTCA
  R
  TATAAGAAAA TTGGCCGGGC GGTGGTGGCA CACGCCTTTA ATCCCAGCAC TCGGGAGACA
  GAGGCAGGTG GATTTCTGAG TTCGAGGCCA GCCTGGTCTA CTGACTGAGT TCCAGGACAG
  CCAGGGCTAC ACAGAGAAAC CCTGTCTTGA AAAAAAACAA AATAAATAAA TAAATAAAAT
  AAAAAATAAA AAGGAAGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss5035456	WI_WGS_11_62919386	WI	MOUSE	f	SNP	G		A
ss38730771	mCV23968372	ABI	CRAMUS_MOUSE	f	SNP	G	A		A
ss323703872	CHEV_11_62294707	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs3659540					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62372031 () rs orientation: forward

Symbol	Name	Function Class
Gm12278	predicted gene 12278	1592 bp upstream
Pigl	phosphatidylinositol glycan anchor biosynthesis, class L	within coordinates