rs36595510 SNP Detail

Summary

• ID
  rs36595510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52215739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAATCAA GGCTAATCTT
  CCACTTACCT GAGTGCCCCG GCTCTTTCCA GGAACCCTAT ATTGATTGCT ATCTCTCTAG
  GGTCTACTCT AACCTCTAAT TCTTGACAGG ATACATTTTA TCAGCAGTGG AGAGTTCTGG
  GACCTTTATA TTTCAAAGCA AATACAAATT CTTTAAAAAA TAGGAGGCAG GGTTAAGTTA
  Y
  CCAGCAACAA TAAAAATGTC CATAGCACCT ACTCTTAGCA CTCTTTAAGT AAAATGGCAT
  CTTAACACCA TGGGGGGAGG GAAGACCCAT GAGCACAAAG CCTTTATCTT AGTTCTCCAT
  TGAGTTCAAT ACTCCCAACT ACCAGAAACA CTTTTCTAGA CTTCTGATAG TCCTTAGGTT
  TCTCCACTGG CTACTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50950449	NES13932103	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36595510					SNP	C	C	C	C	T	C	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950449	NES13932103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52215739 () rs orientation: forward

Symbol	Name	Function Class
D1Ncl2	DNA segment, Chr 1, Nicolas C. Levy 2	494 bp distal
Gls	glutaminase	within coordinates
Rr22237	regulatory region 22237	1139 bp distal
Rr33831	regulatory region 33831	within coordinates
Tssr6673	transcription start site region 6673	796 bp upstream