rs36596466 SNP Detail

Summary

• ID
  rs36596466
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72720564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTAAAGAC TCCTTATGTC
  AACCTCAACC ACTATATGCA CACGGACTAC ATACACATGT GCATCCACAT ACCGGTACAC
  ACACCCATGC ATAAATATGC ACACGCACAC CACATATATA CACATGTGAA AAAACTTACA
  GGTGTGTGGC CACTGAAAAT GACACGCTTT GACTTCCTCA TGGATGTGCA CACACCCGTG
  Y
  GAGTCTGTAT CCACATGAAC ATATGCTTAC ACAAACACAC AAGAAGTCTG TGGGTGGATT
  CCCACATATA TAATGGCTTG GTTCTGTCCT GCCAGAGCAA ATGGACACAC CCAACAGGCA
  GCTGGGCCCT CGGCTACCAC ACTGCTACCC CAAAGCTAAC CACAGAGCAT TTTGCAAGCC
  AAAAGCTTCA GGACACAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51693315	NES14824326	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36596466					SNP	C	C	C	C	C	C	C	C	C	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51693315	NES14824326	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72720564 () rs orientation: forward

Symbol	Name	Function Class
Gm31249	predicted gene, 31249	436 bp upstream
Gm67726	predicted gene, 67726	within coordinates
Rr632291	regulatory region 632291	1993 bp distal
Tcf7l1	transcription factor 7 like 1 (T cell specific, HMG box)	within coordinates
Tssr57163	transcription start site region 57163	439 bp upstream