rs36597621 SNP Detail

Summary

• ID
  rs36597621
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:18709862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTCACTC TGCACAGTTT
  TGTGGCTGGT GTTCGTCCTT CGAACATTTT CATGCTTCTA AGTGACAGTG TACAGGTACA
  GCAGTTAACA CAGTGGGCAT GATGCACTTG TACCAAATGA ATGATCAGCG CTCATCTCCA
  GTGCAGGGCC TCTATATTTC TGGTTGGTTC CGTTTGGCTC CAAGGAAAGC AGGAATAGGT
  K
  ATATCTGTTT GGGATCATTT TGGTGATCAG TGACAGAACT CTGTGACCTG TGACCAAAAT
  AACCAGAATT AAAAGATATA CAATATAATA TAATGCCATA TACTATAATA ATATGATATG
  AATATGTATA AAAACAGAAA ACAGGAAGGA GATTATTATT TGGGGAGGAA GGAGCATAAG
  GAAGAAGGGA GAGAGTATGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50685038	NES13607326	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36597621					SNP	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50685038	NES13607326	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:18709862 () rs orientation: forward

Symbol	Name	Function Class
Gm23238	predicted gene, 23238	243 bp upstream
Gm50202	predicted gene, 50202	within coordinates
Gm59201	predicted gene, 59201	1133 bp upstream
Rr544949	regulatory region 544949	1144 bp distal
Rr544950	regulatory region 544950	1043 bp distal
Rr544951	regulatory region 544951	224 bp proximal
Tssr155454	transcription start site region 155454	1881 bp downstream
Tssr155455	transcription start site region 155455	1849 bp downstream
Tssr155456	transcription start site region 155456	1809 bp downstream
Tssr155457	transcription start site region 155457	1058 bp downstream
Tssr155458	transcription start site region 155458	242 bp upstream