rs36598156 SNP Detail

Summary

• ID
  rs36598156
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49023189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGATACTG TTCTTCTCTG
  TCATGGTCTA CATGTCTGTT TTCTAAAAAC CATAAAAGGT TTCACTTTGA TGTATTATTA
  GTGAAGTGTT ATTTTAAGAG GAACAAAATT GGCTCATTAT TAACAAGGCT GCTGAATTCT
  CAGTATATTA CCAGAGGGCC ACGTCAATGG ATGAGTGGGA GAATACAAGC CCAGCATGTA
  S
  ACATTAAGCA AAATACACAC ACACCCCACA CACAAATAAC ATACACACAC ACCAGACATA
  CACATACATA CTGTACATAC CACACACATA CACCATGCAT GCCATATACT TGAAACATAC
  ATACATACAT ACACACACAC ACACACACAC ACACACACAC ACCACATACC ACCACCACCA
  CCTCCAGGAG CCAACTGAGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51658482	NES14824358	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36598156					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51658482	NES14824358	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49023189 () rs orientation: forward

Symbol	Name	Function Class
D6Dcr8	DNA Segment, Chr 6, Derry C. Roopenian 8	94 bp proximal
D6Mit142	DNA segment, Chr 6, Massachusetts Institute of Technology 142	within coordinates
Gm56981	predicted gene, 56981	within coordinates
Gpnmb	glycoprotein (transmembrane) nmb	within coordinates
Tssr56319	transcription start site region 56319	938 bp downstream
Tssr56320	transcription start site region 56320	898 bp downstream
Tssr56321	transcription start site region 56321	884 bp downstream
Tssr56322	transcription start site region 56322	866 bp downstream
Tssr56323	transcription start site region 56323	830 bp downstream
Tssr56324	transcription start site region 56324	800 bp downstream
Tssr56325	transcription start site region 56325	644 bp downstream
Tssr56326	transcription start site region 56326	629 bp downstream
Tssr56327	transcription start site region 56327	575 bp downstream
Tssr56328	transcription start site region 56328	497 bp downstream
Tssr56329	transcription start site region 56329	421 bp downstream
Tssr56330	transcription start site region 56330	250 bp downstream
Tssr56331	transcription start site region 56331	205 bp downstream
Tssr56332	transcription start site region 56332	132 bp downstream
Tssr56333	transcription start site region 56333	94 bp downstream
Tssr56334	transcription start site region 56334	84 bp downstream
Tssr56335	transcription start site region 56335	64 bp downstream
Tssr56336	transcription start site region 56336	37 bp downstream
Tssr56337	transcription start site region 56337	14 bp downstream
Tssr56338	transcription start site region 56338	within coordinates
Tssr56339	transcription start site region 56339	3 bp upstream
Tssr56340	transcription start site region 56340	195 bp upstream
Tssr56341	transcription start site region 56341	455 bp upstream
Tssr56342	transcription start site region 56342	487 bp upstream
Tssr56343	transcription start site region 56343	1037 bp upstream
Tssr56344	transcription start site region 56344	1051 bp upstream
Tssr56345	transcription start site region 56345	1069 bp upstream
Tssr56346	transcription start site region 56346	1106 bp upstream
Tssr56347	transcription start site region 56347	1144 bp upstream
Tssr56348	transcription start site region 56348	1170 bp upstream
Tssr56349	transcription start site region 56349	1493 bp upstream
Tssr56350	transcription start site region 56350	1520 bp upstream
Tssr56351	transcription start site region 56351	1550 bp upstream
Tssr56352	transcription start site region 56352	1563 bp upstream
Tssr56353	transcription start site region 56353	1632 bp upstream
Tssr56354	transcription start site region 56354	1647 bp upstream
Tssr56355	transcription start site region 56355	1672 bp upstream
Tssr56356	transcription start site region 56356	1690 bp upstream
Tssr56357	transcription start site region 56357	1702 bp upstream
Tssr56358	transcription start site region 56358	1720 bp upstream
Tssr56359	transcription start site region 56359	1735 bp upstream
Tssr56360	transcription start site region 56360	1772 bp upstream
Tssr60846	transcription start site region 60846	863 bp upstream
Tssr60847	transcription start site region 60847	780 bp upstream
Tssr60848	transcription start site region 60848	80 bp downstream
Tssr60849	transcription start site region 60849	1074 bp downstream
Tssr60850	transcription start site region 60850	1129 bp downstream
Tssr60851	transcription start site region 60851	1599 bp downstream
Tssr60852	transcription start site region 60852	1642 bp downstream
Tssr60853	transcription start site region 60853	1652 bp downstream
Tssr60854	transcription start site region 60854	1671 bp downstream
Tssr60855	transcription start site region 60855	1704 bp downstream
Tssr60856	transcription start site region 60856	1742 bp downstream
Tssr60857	transcription start site region 60857	1771 bp downstream