rs36598397 SNP Detail

Summary

• ID
  rs36598397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145533474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCTGGTT GAACTTTCTC
  CTTCTTCTTA AGCTTTCTTA CCCTGTCCCC TTGGGTGTCA GTCCCTGCAC AGCTTTCCAC
  TGGTTTCCGT TACGAAGAAG GCTGCATGTT AGAGTGTGCC CTGCAGGCTA GAAAGAGTTA
  ATAATCTACT TTCCAGCATT TCTGAGTTAC TGTCCAAGAG AATCTGAAGC AGCAAGAAAA
  Y
  CCGCCTAACT ATAGAATGTC AGTCCAGAAG CGGTCCCGTT GCCGTGTTCT CGGGCACTTA
  CTTGTTCAGG TAAGTGGGTT TTGCCAGCAG ATTGTCTGCT TTGCTGGCCT AAGGAGCTTT
  GTTTTCGAAT GAGCGCATTC CTGGTGTGGA CTGGAATGCA TCTGAGCTGT AATAAATCTG
  CTTGACACAC AATGGAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51669767	NES14637708	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36598397					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51669767	NES14637708	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145533474 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ddah1	dimethylarginine dimethylaminohydrolase 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr586848	regulatory region 586848			1664 bp distal
Rr586849	regulatory region 586849			within coordinates
Tssr32303	transcription start site region 32303			within coordinates