rs3659888 SNP Detail

Summary

• ID
  rs3659888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141264222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGTACA GCGCAGAGGG
  GTTTCCACTC CAGAACCTAA GAAAGCGGAG TGCTATCTTC TCCACGCTGA GGACCTGCTA
  CTAGAGGGCA GAGACCCGAG CCGAGGGGTG GAGCAGCACG GGCAGAGAAA GTTCCCATCT
  GCTGGCGCTC CAGCTGCTGC AGTCCCCTTT CATCCCCGGG CACCCCGGCC AACACTCCAT
  Y
  TCCGGACCTC CCCCTCTCCC GTGTCTCAGA CACAACGTAG TAAACACCCG GAGTCCCAGG
  CAGCGCGCAC CTCCCCCAGG CCTGCGGAGG ACATCCCGGC AGGTTATGAA TGGCCTCACT
  ATACCCAGCT CCTTTTCACA CGCGGGCACG CGCACACGCG CGCCCCGGAG GCGAAGATTT
  AATACCCCCG GTCAGAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5035806	WI_WGS_4_139278538	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3659888					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141264222 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15233	CpG island 15233	within coordinates
Cpgi15234	CpG island 15234	508 bp proximal
Gm4123	predicted gene 4123	within coordinates
Rr1207	regulatory region 1207	within coordinates
Rr603787	regulatory region 603787	1496 bp distal
Rr603788	regulatory region 603788	106 bp distal
Rr603789	regulatory region 603789	1528 bp proximal
Spen	spen family transcription repressor	within coordinates
Tssr44321	transcription start site region 44321	1523 bp downstream
Tssr44322	transcription start site region 44322	1651 bp downstream