rs36598965 SNP Detail

Summary

• ID
  rs36598965
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37165809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCTCTCT TTCTGAAAAC
  ATAAAACTGT TTAATAGTTC CAAATGTAGA AAGGACCACA TAAACCATCT AAAGAATGTT
  TTAGATGATT ATTAGCCTGA GAGACCTTGA AACAAAATGA CTTATTTTAA AACCAGGCCA
  AATTGATGAC TAAGTATCTG CCCAATCTGA CCCTTAGTTT AGTTTGAGAA TTTAGATTTG
  R
  GATTGCTGTG TCATCTGTTT TGTTTTTGTT TTGTTTTTTT TAGAAGCCAG CAACTGGCTA
  TTTTGTTAAG TTTTATAGTT TATAAATGAC GGTAACTAAC AAAATGTTTT AACACTCTTC
  CTTCCCCACC TCTTGCAGAC CAAGTACACT GCTCCAAAAG CTCAATGGAG ATTGGCTAAA
  ACCTCTTCTC CCAGCACAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50674837	NES14008184	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36598965					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674837	NES14008184	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37165809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	659 bp proximal
Gm10177	predicted gene 10177	1332 bp downstream
Gm48081	predicted gene, 48081	985 bp upstream
Gm65989	predicted gene, 65989	1148 bp downstream
Rr676656	regulatory region 676656	161 bp proximal
Rr676657	regulatory region 676657	891 bp proximal
Rr676658	regulatory region 676658	996 bp proximal
Rr676659	regulatory region 676659	1215 bp proximal
Rr676660	regulatory region 676660	1523 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	844 bp downstream
Tssr88822	transcription start site region 88822	868 bp downstream
Tssr88823	transcription start site region 88823	890 bp downstream
Tssr88824	transcription start site region 88824	916 bp downstream
Tssr88825	transcription start site region 88825	931 bp downstream
Tssr88826	transcription start site region 88826	1017 bp downstream
Tssr88827	transcription start site region 88827	1110 bp downstream
Tssr88828	transcription start site region 88828	1133 bp downstream
Tssr88829	transcription start site region 88829	1156 bp downstream
Tssr88830	transcription start site region 88830	1172 bp downstream
Tssr88831	transcription start site region 88831	1217 bp downstream