rs3659949 SNP Detail

Summary

• ID
  rs3659949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:83530411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA CTAGAGGGAA GAAGACAAAA
  Y
  CCCCACTAAC AGTCCTCCCC ACTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5035867	WI_WGS_7_73592124	WI	MOUSE	f	SNP	C			T
ss46109961	mCV24812029	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T	C
ss145197740	ENSMUSSNP2383623	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3659949					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:83530411 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19376	CpG island 19376	1007 bp proximal
Gm74146	predicted gene, 74146	1884 bp upstream
Rr381056	regulatory region 381056	1118 bp downstream
Rr650491	regulatory region 650491	1895 bp distal
Rr650492	regulatory region 650492	1545 bp distal
Tlnrd1	talin rod domain containing 1	within coordinates
Tssr2320	transcription start site region 2320	1015 bp upstream