rs3660018 SNP Detail

Summary

• ID
  rs3660018
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:69000041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT GGTGGGTGTG GTGTTGGCGG
  Y
  GGTGGGGGTG ATGGTGGTGA GGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	LG/J	SM/J
ss5035937	WI_WGS_11_69690318	WI	MOUSE	f	SNP	C	T
ss323727507	CHEV_11_68922717	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	LG/J	SM/J
rs3660018					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69000041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi3105	CpG island 3105			1644 bp proximal
n-TScga3	nuclear encoded tRNA serine 14 (anticodon CGA)			1704 bp upstream
n-TTagt5	nuclear encoded tRNA threonine 5 (anticodon AGT)			1250 bp upstream
Per1	period circadian clock 1			Coding-NonSynonymous
				Coding-Synonymous
Rr402659	regulatory region 402659			1357 bp upstream
Rr449875	regulatory region 449875			814 bp proximal
Rr449876	regulatory region 449876			1357 bp proximal