rs36601210 SNP Detail

Summary

• ID
  rs36601210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32572444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTAGGA GTCGCAGTCA
  TCCCTGCCAT AAAGGGAAGG CTCTAGGAAC TGCACAAGTT CACCAGAGCC TGCATTCAAA
  TGTGCAAGCT AATAGGAGAC CCTCAAGTCT CTGCCCAGAC TCCTGGGGCT CTGGGCAGCT
  TCAGAAGTAT GTTTCACTGG CTGGTTCAGG TTTCTCTGGG AAAGAAACAG ACACAAAGAA
  Y
  GGAGGGACCT GTTTAGGGGA ACTACCAAGA AGAGCCCTAC CCCCCCACCC CACCCCTGCC
  CTGAAGTTAT AGGCAGGATG TGCATATTCA GGAAATCTCA CTAAGTTCAG AGACCCAGAG
  GGTAGTTCCA TGGGTACAGA GCTTGCCCAC AGTGTATGAG GTCCTGAGCT CAGCCCCTGC
  ATTTTATAAA ATGGCTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51692636	NES14756043	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36601210					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51692636	NES14756043	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32572444 () rs orientation: forward

Symbol	Name	Function Class
Rr609355	regulatory region 609355	1568 bp distal
Rr609356	regulatory region 609356	1178 bp distal
Rr609357	regulatory region 609357	151 bp distal
Rr609358	regulatory region 609358	1532 bp proximal