rs36601391 SNP Detail

Summary

• ID
  rs36601391
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:10971975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCTTTC ACATATTTGG
  CCAATGACAG CATCCAGAGC TAAGCACAAA GCTATTCCAT TCATCTCAAC TATTTCAGCA
  ATTGTGTCTG GAAGCACACA GGAAACATTG CCATGGATAC GGAGCTCTAT GCAATGCTGC
  CTGAGCCTTG AATCTGCCTG TTTTGCACTT GGTTGTTAAT AGTCTGTCAC CTCTTCATTC
  Y
  GATGGTCACA GATGTCTTTT AGACAACTAT CCCACCCAGG CTAGCCCTTC TGGGTGGCAA
  AGAGAACTAA GGGAGAAGAG GAAGGGCCCA GGAGGGTACG AAGTCCAGGG GACAAACCCA
  GGTCACTCCA TGTGTCTGCT TTGCGGCTCA TCTCACCAGC TTGTGGCAGT GATAGTGTGC
  ACTCCATGTA GGCCCTTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51942743	NES14965282	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36601391					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51942743	NES14965282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:10971975 () rs orientation: forward

Symbol	Name	Function Class
D8Ertd130e	DNA segment, Chr 8, ERATO Doi 130, expressed	1524 bp distal
Gm32594	predicted gene, 32594	891 bp upstream
Gm44955	predicted gene 44955	within coordinates
Rr659385	regulatory region 659385	within coordinates
Rr659386	regulatory region 659386	262 bp proximal