rs36601461 SNP Detail

Summary

• ID
  rs36601461
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28165188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCATTC ATTCCCTGTG
  CTGTCTCAAG GATATAGGAA TTCTCATTGT TCCTGTTAGA GGGAAATGGT ACACAGAGAA
  GTTAAGAAAC AGGTGTGTGG TCACAGAGCT AGCAAAGGGC AGAGAGGTGG CTCCCGGGTA
  TTTAACTGAA GGACTTTGCT ATGCTATGTA CCTTATTTGA GAGGAGGCTA TAGCAAAGAA
  Y
  GAAGCCCATG CTTGGCTACA GTTTAGTCAG TTGTAGATAA GTATGTGGAA GGTATGCTTC
  AGTGAATTGG TTCCTGGAAT TCTGGTGGTA CAACGAAGAG CGTTCATAGA ACAGCCGGTT
  GCCTCTAGAG GAGCTGTCCC AAGGTGCCTC GAAGGGCTTG TAAGCCAGAG TGCAACTTAG
  AAGGGCAGTG AGTGGGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	PWD/PhJ
ss51887030	NES14904585	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	PWD/PhJ
rs36601461					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887030	NES14904585	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28165188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18706	CpG island 18706	800 bp proximal
Lrfn1	leucine rich repeat and fibronectin type III domain containing 1	Intron
Rr644282	regulatory region 644282	402 bp distal
Rr644283	regulatory region 644283	1221 bp proximal
Rr644284	regulatory region 644284	1338 bp proximal