rs36601898 SNP Detail

Summary

• ID
  rs36601898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:10203627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCAGAGG TCAACACGTC
  CTGTACAAAA CATGTACTTG CCCAGAGGGA GAGACTGTGG CTGTCCAGAG ACCCAACTTT
  TGGTCATCTC TCATCTCCAC ATCTAGAGAG GCTCCCCTCT ACTATGCCAG AGACCACCAG
  AAAGGCTCAG GTTCATCATG GACACATTCC TTCTCTGACC GCAGAATCAT ACTACATCCC
  Y
  GGACAAGTTG GCCACTTCTT TCCCACCTCC ACCCCTACTT ATGAAGGCCT CACCACATCT
  CTGAAATTAG TTCAGGACCC TTAATCTGGT GCATACATGT ACCCCAAGGT ACTCAGGAGA
  CTCAAGACTG AGGACCACAA GTTCAAGGAC TACTTGGGCT AGTAAGTAAA ATAAGGTTTC
  AAAAAAGTGA AAAGAAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50603582	NES13642980	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36601898					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50603582	NES13642980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:10203627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10602	CpG island 10602	837 bp distal
Myrf	myelin regulatory factor	within coordinates
Rr544042	regulatory region 544042	1026 bp distal
Tssr158169	transcription start site region 158169	1001 bp upstream