rs3660196 SNP Detail

Summary

• ID
  rs3660196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70120169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAATTGA ATCACATGTG
  CTTGTATGTC TGTGTACCGT ATACATGACC ATGTACATGC CTGGGCCTGA GGATACAAGC
  AGAGGGTATG TTAATCCCTT GAAACTAGAG TTACAGATGG CTGTGGTCCA TACTGTATGG
  ATGCTGAGAA TCAAACCTGG GTCCTTTGCA AGAACAACCA GTGCTCCAAC TGCTGAGCCA
  Y
  CTTCCTAGCC CCATTATTTG CATATGTGTG TATATATCAA GGATACAGCA ACTTGTGTTT
  TTACCCTTAT GTAATTAAAA TGGTTTCAAT AGTATTTTTT TGCTTCGTTT TTGGGTTTGG
  ATTTGTGTGT GTGTGTGGTT TTGTTAGTTT TTGGGTTTTG TTTTGCTTTT TTGAGTCAGG
  GTTTCTCTGA GCAGTCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss5036115	WI_WGS_9_70827399	WI	MOUSE	f	SNP	T			C
ss46403312	mCV22673776	ABI	CRAMUS_MOUSE	f	SNP		T	C	C	C
ss136604765	ENSMUSSNP4828869	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3660196					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70120169 () rs orientation: forward

Symbol	Name	Function Class
Gm26849	predicted gene, 26849	within coordinates
Gm68934	predicted gene, 68934	1118 bp upstream
Myo1e	myosin IE	within coordinates
Tssr85881	transcription start site region 85881	324 bp upstream
Tssr90403	transcription start site region 90403	1143 bp upstream