rs36602149 SNP Detail

Summary

• ID
  rs36602149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69622892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAGCCTC TCCCTGAGCA
  ACACAAGCCT AAGCAGAGAT ACTGGCTTCC CCTTCAGCGG ATGAGTTACT CCTTAGGCCC
  TTCTTCCAGG GGGGTCTCAA CTACAGGGCT TTGCTCACCA AAAGGCCTAC ATGTGCCCAA
  CACTGAACTC CTCCAAAGCA GGGCTTCTCC CAGGCTCCTG TGTGGGAAGC AGTTGGCACT
  R
  AGGGTGCCCT TTAGTTAATT AAGTCCTGCA GTAGAGCTCA GTGCTGGCCT CACTCCACAA
  CTGGGAGTTT TAATTTCCCG CTTCATTCTG TTACAAATTC CGTCCCTCCC CAAGGTCAGG
  TTCCCAGAGG CAGTGATTGT GGAAGGACAG GTTCAGGAGT GGGTCTAGCT AGCAGGGAGG
  AGGGGAGGCA AGCAGGGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51017739	NES14400667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36602149					SNP	G	G	G	G	A	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51017739	NES14400667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69622892 () rs orientation: forward

Symbol	Name	Function Class
Rr257074	regulatory region 257074	1092 bp distal
Rr403327	regulatory region 403327	1273 bp downstream
Vcpkmt	valosin containing protein lysine (K) methyltransferase	1510 bp downstream