rs36602882 SNP Detail

Summary

• ID
  rs36602882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:19585089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACCAAGGA TAGAGCTAAA
  AGTCCACAGT TGAAAGGGTT TGCTCATGCA ATCAACAAAT TTAGGATCAA AATGCAAGTG
  TGCCGTAAAA TAGGAGCTAA ATAGTATACT GGATATTGTG AATTTTCCAA ATAGACACAA
  TAGTGATGCT AGAGATGCCC CACATATCCC TAAATATGAA TCTACCCAGT TCTTAGAAAA
  R
  TGTTCCAAAT ATATGCTCCA GAAAAATTGT AGTTCACAGT AGCCAGTCTG CATTAGGATA
  CAGATGGCAG TTAGTTAAAC AATGAATGGA CTATCTAAAC CTTATATATA GAAAATTTTT
  ATGATGAAAA TTCATGATAT ACCTATTCAA GTATTTTTAT TCAAACAGTT TGGGAAATTC
  TCACTCAAAG TATATACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50921111	NES13476783	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36602882					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50921111	NES13476783	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:19585089 () rs orientation: forward

Symbol	Name	Function Class
Gm55451	predicted gene, 55451	946 bp upstream