rs36602921 SNP Detail

Summary

• ID
  rs36602921
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45313702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTTTGTG AGGAAAAAGG
  AAGCTAGTTG TCAGGGTGAC CAGACCCAGC ATTACTCATG CTCTGCTGGT ATTCCCACTA
  GGATGATCTT GAGAGCCTGG AGGAGACCCT GTGGTCCAGT CTCAGCCAAC AGTGGCTTCT
  TACAGTAGAC TTGCTTGGGC CTGTCACTGC GGTCAGGGCA CAAAGACTCT GGGAGGCACT
  R
  AGTCCTTGGT TGTCTCTGTG CACTATCCCG GCTTGGGGAC CTTTTGGCTT CTCAGAGGAC
  CTCATTATGT GCCGGAACTC TTGCTGAGAC CTGTAAGTGC ATCCAGGCAG GTGTGACATC
  ATAAATGACA CATGCCCCCA GGGTTAGGTG GGGAGGAGGA AGGACAGGCC ACCAAGGGAG
  TACCCTCAAA ACAGCTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52013370	NES15030346	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36602921					SNP	G	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013370	NES15030346	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45313702 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	302 bp distal
Rr200381	regulatory region 200381	502 bp distal
Tssr84783	transcription start site region 84783	161 bp upstream
Tssr84784	transcription start site region 84784	211 bp upstream
Tssr84785	transcription start site region 84785	738 bp upstream
Tssr84786	transcription start site region 84786	770 bp upstream
Tssr84787	transcription start site region 84787	792 bp upstream
Tssr84788	transcription start site region 84788	823 bp upstream
Tssr84789	transcription start site region 84789	849 bp upstream