rs36602985 SNP Detail

Summary

• ID
  rs36602985
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103978962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGCCCTGG GGGAGTTTCT GTATTATGCA GAAACTCTGC
  ACCAGCAGTC CGCAAGGACT GTTCCATAAT TAAAGGTGCT CTGTCAAGGA AGACTTCTGC
  M
  GCCTCCACGG TTTGTGAATT AACTGCTAAC ACAGTATAAG CTTTGTTCTT TCCTGTTACC
  AGAAATCTTC AACTTGATGT CAAAGAGCAA TAGAGCCAAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50790559	NES14206547	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36602985					SNP	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50790559	NES14206547	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103978962 () rs orientation: forward

Symbol	Name	Function Class
Acad11	acyl-Coenzyme A dehydrogenase family, member 11	within coordinates
Ackr4	atypical chemokine receptor 4	within coordinates
Gm47000	predicted gene, 47000	150 bp downstream
Rr686043	regulatory region 686043	492 bp proximal
Rr686044	regulatory region 686044	1045 bp proximal
Rr686045	regulatory region 686045	1246 bp proximal
Tssr2998	transcription start site region 2998	815 bp downstream
Tssr91231	transcription start site region 91231	553 bp downstream
Tssr91232	transcription start site region 91232	579 bp downstream
Tssr91233	transcription start site region 91233	665 bp downstream
Tssr91234	transcription start site region 91234	787 bp downstream
Tssr91235	transcription start site region 91235	1238 bp downstream