rs3660330 SNP Detail

Summary

• ID
  rs3660330
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89342069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGT CAGAATTCAG TGACATGGAG
  K
  TTCAGCATTT TAAAGGCACA GGATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5036249	WI_WGS_10_89701713	WI	MOUSE	f	SNP					G	T
ss38542138	mCV23616607	ABI	CRAMUS_MOUSE	f	SNP		G				T		T
ss61302151	NES16913849	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	G		T	T	G	G		T	G	G	T		T
ss147252846	ENSMUSSNP7162395	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						T
ss323382132	CHEV_10_88968952	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3660330					SNP	T	G	G	T	G	T	T	T	G	G	G	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61302151	NES16913849	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89342069 () rs orientation: forward

Symbol	Name	Function Class
Nr1h4	nuclear receptor subfamily 1, group H, member 4	within coordinates
Tssr98874	transcription start site region 98874	424 bp downstream