rs36603341 SNP Detail

Summary

• ID
  rs36603341
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61327872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCATAAA GCACTTCTAA
  GTTCTCCTGG ACACCAGACT CCCAGACATT GGGGCTATGC GGAAGGGTTC ACTTCCATGC
  AAAGAGTCTT CAGCTATCCC TACAGCACCT CCTTGAGAAC TCAGAAGTGA GGACACTCAC
  CGGTGTGTGT GGGTGGCTGG ATGGGTGTTG TGGAGAGCTC GAGCCGTCGC CGTAAATGAA
  R
  AGGCATTAGT CCCCAAACCT ACTCTTTTCT GTCCTTTGCA GCTTAGGAGT TAATCCTGGT
  AACATGTTCT TAAATGTCAA GCTGCCAGAA ACATCCCTGC AGAGGCTCAC TGGTTTTGCT
  ACAATGTAGC CAGAAGCATT AGTCTGATGA ATTCATCTAT CACTTCAGGC AGTCTCAAAG
  TTCACCACTC ACTGTGCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50413762	NES13453165	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36603341					SNP	G	G	G	G	G	G	A	G	G	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50413762	NES13453165	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61327872 () rs orientation: forward

Symbol	Name	Function Class
Rr354846	regulatory region 354846	673 bp distal
Rr356345	regulatory region 356345	within coordinates
Tssr153542	transcription start site region 153542	1398 bp downstream
Tssr153543	transcription start site region 153543	1564 bp downstream
Tssr153544	transcription start site region 153544	1746 bp downstream