rs3660367 SNP Detail

Summary

• ID
  rs3660367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:84586308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCCAATG GTAATCCCTG
  GGCTACAGAA GCGGATGCAG ACTGGATCAT AGGAAGAGGC CAGATAGGGT CACTTGGAAG
  GCTCCCCATC ATTAGGGCTG CTACCTGGGG TATAAAGCCC TAGTACTGGG TGTCTTCCAG
  CTCAAACAAG TTAGAACTGG GGAACTTCAC ACCTCCCAGG ACCTGTTTGG CTGTAGACAC
  Y
  TACCTGGCAA CCAACCCCTC CTGATCCAGG GAGGCACTCT GACAGAGCTT GTTGTACTCA
  AGAGTGCCGC CTCATGGAGA CTATTAGGCA TTGCAGGGTC CTGCATAGAA GCCTTTCTTC
  TACATGGCCA ATGGAATTTG GCTCTGTCCT CACTCTCTAT TCTGCCAACG AGGCCTGTAA
  ACAGCCGCTT CATAGCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss5036286	WI_WGS_15_85502032	WI	MOUSE	f	SNP						C	T
ss48087319	NES12084282	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C		T	T		T	C	C	C		T
ss148254535	ENSMUSSNP144950	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss325039415	CHEV_15_84532537	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs3660367					SNP	T	C	T	C	T	C	T	T	T	T	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48087319	NES12084282	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:84586308 () rs orientation: forward

Symbol	Name	Function Class
Prr5	proline rich 5 (renal)	within coordinates
Rr304869	regulatory region 304869	1108 bp distal
Rr304870	regulatory region 304870	within coordinates
Rr304871	regulatory region 304871	1493 bp proximal
Rr314876	regulatory region 314876	1252 bp distal
Rr314877	regulatory region 314877	within coordinates
Rr404546	regulatory region 404546	within coordinates