rs36604076 SNP Detail

Summary

• ID
  rs36604076
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38355425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGGGAAGC CTCTGCTTTG
  GGTTCTACTG TCACTGTTTG CAAAACTCCT TAGACTCTAC AGGGCTGAGT TCTTGTACTC
  CTTCCTTTAT ACCATGATGC TTAGAATACT GAATCTCTAC CCATCCATTG TCTAGTCTGC
  ATGCTTGAGT AGGGCTCTGC ACTGGGTCTG AAAAACCCTA AAGGGTGAGA GTCTAACAAA
  K
  TCTAGGATAA ATGGGTGCCT AGAGCTTGAA TTTGTTGGTC CCTCGAGGGT TCACAGTGAT
  GCACAAAGCC CTTTTAGAGC AGGTTACAGT TTGGGGTGAG AAGGGTTAAA GGCTGAGAAT
  TGGGGTTAGA TCTTTGTGCT CTGCCACACC CACCAAAGAA TTCCAATATT TCTAAATTGG
  GGCCCAAACT TTTACATTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51288109	NES13774262	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	T		G	G	T	G
ss133127223	ENSMUSSNP4445616	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36604076					SNP	G	G	G	G	G	G	T	G	G	T	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288109	NES13774262	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38355425 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	1215 bp distal
Rpl30-ps1	ribosomal protein L30, pseudogene 1	1336 bp downstream
Rr135132	regulatory region 135132	576 bp proximal
Rr146156	regulatory region 146156	1424 bp distal
Rr146157	regulatory region 146157	1975 bp proximal
Tssr55644	transcription start site region 55644	1752 bp downstream